RPPanalyzer: Reads, Annotates, and Normalizes Reverse Phase Protein Array Data

Reads in sample description and slide description files and annotates the expression values taken from GenePix results files (text file format used by many microarray scanner and software providers). After normalization data can be visualized as boxplot, heatmap or dotplot.

Version: 1.4.9
Depends: R (≥ 2.14)
Imports: quantreg, limma, lattice, stats4, gam, gplots, grid, ggplot2, Hmisc, Biobase, methods, utils, graphics
Published: 2024-01-25
DOI: 10.32614/CRAN.package.RPPanalyzer
Author: Heiko Mannsperger with contributions of Stephan Gade
Maintainer: Torsten Schoeps <torsten.schoeps at bioinf.med.uni-goettingen.de>
License: LGPL-2 | LGPL-2.1 | LGPL-3 [expanded from: LGPL]
NeedsCompilation: no
CRAN checks: RPPanalyzer results

Documentation:

Reference manual: RPPanalyzer.pdf
Vignettes: An R Package to read, normalize and visualize RPPA data

Downloads:

Package source: RPPanalyzer_1.4.9.tar.gz
Windows binaries: r-devel: RPPanalyzer_1.4.9.zip, r-release: RPPanalyzer_1.4.9.zip, r-oldrel: RPPanalyzer_1.4.9.zip
macOS binaries: r-release (arm64): RPPanalyzer_1.4.9.tgz, r-oldrel (arm64): RPPanalyzer_1.4.9.tgz, r-release (x86_64): RPPanalyzer_1.4.9.tgz, r-oldrel (x86_64): RPPanalyzer_1.4.9.tgz
Old sources: RPPanalyzer archive

Linking:

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