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2020 – today
- 2024
[c7]Jing Gong, Hassaan Saadat, Haris Javaid, Hasindu Gamaarachchi, David Taubman
, Sri Parameswaran:
SEA: Sign-Separated Accumulation Scheme for Resource-Efficient DNN Accelerators. DATE 2024: 1-6- [c6]Kisaru Liyanage, Hasindu Gamaarachchi, Hassaan Saadat, Tuo Li, Hiruna Samarakoon, Sri Parameswaran:
Accelerating Chaining in Genomic Analysis Using RISC- V Custom Instructions. DATE 2024: 1-6 - 2023
- [j7]Anjana Senanayake, Hasindu Gamaarachchi, Damayanthi Herath, Roshan G. Ragel:
DeepSelectNet: deep neural network based selective sequencing for oxford nanopore sequencing. BMC Bioinform. 24(1): 31 (2023) - [j6]Kisaru Liyanage, Hasindu Gamaarachchi, Roshan G. Ragel, Sri Parameswaran:
Cross Layer Design Using HW/SW Co-Design and HLS to Accelerate Chaining in Genomic Analysis. IEEE Trans. Comput. Aided Des. Integr. Circuits Syst. 42(9): 2924-2937 (2023) - [j5]Jing Gong, Hassaan Saadat, Hasindu Gamaarachchi, Haris Javaid, Xiaobo Sharon Hu, Sri Parameswaran:
ApproxTrain: Fast Simulation of Approximate Multipliers for DNN Training and Inference. IEEE Trans. Comput. Aided Des. Integr. Circuits Syst. 42(11): 3505-3518 (2023) - [c5]Hasindu Gamaarachchi, Kisaru Liyanage, Sri Parameswaran:
Invited: Algorithms and Architectures for Accelerating Long Read Sequence Analysis. DAC 2023: 1-4 - 2022
- [j4]James M. Ferguson, Hasindu Gamaarachchi, Thanh Nguyen, Alyne Gollon, Stephanie Tong, Chiara Aquilina-Reid, Rachel Bowen-James, Ira W. Deveson:
InterARTIC: an interactive web application for whole-genome nanopore sequencing analysis of SARS-CoV-2 and other viruses. Bioinform. 38(5): 1443-1446 (2022) - [i5]Jing Gong, Hassaan Saadat, Hasindu Gamaarachchi, Haris Javaid, Xiaobo Sharon Hu, Sri Parameswaran:
ApproxTrain: Fast Simulation of Approximate Multipliers for DNN Training and Inference. CoRR abs/2209.04161 (2022) - [i4]Po Jui Shih, Hassaan Saadat, Sri Parameswaran, Hasindu Gamaarachchi:
Efficient Real-Time Selective Genome Sequencing on Resource-Constrained Devices. CoRR abs/2211.07340 (2022) - 2021
- [i3]Hasindu Gamaarachchi:
Computer Architecture-Aware Optimisation of DNA Analysis Systems. CoRR abs/2101.05012 (2021) - 2020
- [b1]Hasindu Gamaarachchi:
Computer Architecture-Aware Optimisation of DNA Analysis Systems. University of New South Wales, Sydney, Australia, 2020 - [j3]Hasindu Gamaarachchi, Wai Chun Lam, Gihan Jayatilaka, Hiruna Samarakoon, Jared T. Simpson, Martin A. Smith, Sri Parameswaran:
GPU accelerated adaptive banded event alignment for rapid comparative nanopore signal analysis. BMC Bioinform. 21(1): 343 (2020) - [j2]Hasindu Gamaarachchi, Arash Bayat, Bruno Gaëta, Sri Parameswaran:
Cache Friendly Optimisation of de Bruijn Graph Based Local Re-Assembly in Variant Calling. IEEE ACM Trans. Comput. Biol. Bioinform. 17(4): 1125-1133 (2020) - [c4]Ann Franchesca Laguna, Hasindu Gamaarachchi, Xunzhao Yin, Michael T. Niemier, Sri Parameswaran, Xiaobo Sharon Hu:
Seed-and-Vote based In-Memory Accelerator for DNA Read Mapping. ICCAD 2020: 56:1-56:9
2010 – 2019
- 2019
- [j1]Ram Prasad Mohanty, Hasindu Gamaarachchi, Andrew J. Lambert, Sri Parameswaran:
SWARAM: Portable Energy and Cost Efficient Embedded System for Genomic Processing. ACM Trans. Embed. Comput. Syst. 18(5s): 61:1-61:24 (2019) - 2018
- [i2]Hasindu Gamaarachchi, Harsha Ganegoda:
Power Analysis Based Side Channel Attack. CoRR abs/1801.00932 (2018) - 2015
- [c3]M. A. C. Jiffriya, M. A. C. Akmal Jahan, Hasindu Gamaarachchi, Roshan G. Ragel:
Accelerating text-based plagiarism detection using GPUs. ICIIS 2015: 395-400 - [c2]Hasindu Gamaarachchi, Harsha Ganegoda, Roshan G. Ragel:
The A to Z of building a testbed for Power Analysis attacks. ICIIS 2015: 501-506 - [c1]Suneth Namal, Hasindu Gamaarachchi, Gyu Myoung Lee, Tai-Won Um:
Autonomic trust management in cloud-based and highly dynamic IoT applications. Kaleidoscope 2015: 1-8 - 2014
- [i1]Hasindu Gamaarachchi, Roshan G. Ragel, Darshana Jayasinghe:
Accelerating Correlation Power Analysis Using Graphics Processing Units. CoRR abs/1412.7682 (2014)
Coauthor Index
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