Metabolic regulation is sufficient for global and robust coordination of glucose uptake, catabolism, energy production and growth in Escherichia coli - Pierre Millard; Kieran Smallbone; Pedro Mendes (PLoS Comput. Biol., 2017)

Toward Community Standards and Software for Whole-Cell Modeling - Dagmar Waltemath; Jonathan R. Karr; Frank T. Bergmann; Vijayalakshmi Chelliah; Michael Hucka; Marcus Krantz; Wolfram Liebermeister; Pedro Mendes; Chris J. Myers; Pinar Pir; Begum Alaybeyoglu; Naveen K. Aranganathan; et al. (IEEE Trans. Biomed. Eng., 2016)

BioPreDyn-bench: a suite of benchmark problems for dynamic modelling in systems biology - Alejandro Fernández Villaverde; David Henriques; Kieran Smallbone; Sophia Bongard; Joachim Schmid; Damjan Cicin-Sain; Anton Crombach; Julio Saez-Rodriguez; Klaus Mauch; Eva Balsa-Canto; Pedro Mendes; Johannes Jaeger; et al. (BMC Syst. Biol., 2015)

A robust and efficient method for estimating enzyme complex abundance and metabolic flux from expression data - Brandon E. Barker; Narayanan Sadagopan; Yiping Wang; Kieran Smallbone; Christopher R. Myers; Hongwei Xi; Jason W. Locasale; Zhenglong Gu (Comput. Biol. Chem., 2015)

Computational Methods in Systems Biology - 12th International Conference, CMSB 2014, Manchester, UK, November 17-19, 2014, Proceedings - Pedro Mendes; Joseph O. Dada; Kieran Smallbone (Springer, 2014)

BioPreDyn-bench: benchmark problems for kinetic modelling in systems biology - Alejandro Fernández Villaverde; David Henriques; Kieran Smallbone; Sophia Bongard; Joachim Schmid; Damjan Cicin-Sain; Anton Crombach; Julio Saez-Rodriguez; Klaus Mauch; Eva Balsa-Canto; Pedro Mendes; Johannes Jaeger; et al. (CoRR, 2014)

Version 6 of the consensus yeast metabolic network refines biochemical coverage and improves model performance - Benjamin D. Heavner; Kieran Smallbone; Nathan D. Price; Larry P. Walker (Database J. Biol. Databases Curation, 2013)

Yeast 5 - an expanded reconstruction of the Saccharomyces cerevisiae metabolic network - Benjamin D. Heavner; Kieran Smallbone; Brandon Barker; Pedro Mendes; Larry P. Walker (BMC Syst. Biol., 2012)

Improving metabolic flux predictions using absolute gene expression data - Dave Lee; Kieran Smallbone; Warwick B. Dunn; Ettore Murabito; Catherine Winder; Douglas B. Kell; Pedro Mendes; Neil Swainston (BMC Syst. Biol., 2012)

The SuBliMinaL Toolbox: automating steps in the reconstruction of metabolic networks - Neil Swainston; Kieran Smallbone; Pedro Mendes; Douglas B. Kell; Norman W. Paton (J. Integr. Bioinform., 2011)

Kinetic modelling of large-scale metabolic networks - Pedro Mendes; Natalie J. Stanford; Kieran Smallbone (Computational Methods in Systems Biology, 9th International Conference, CMSB 2011, Paris, France, September 21-23, 2011. Proceedings, 2011)

Towards a genome-scale kinetic model of cellular metabolism - Kieran Smallbone; Evangelos Simeonidis; Neil Swainston; Pedro Mendes (BMC Syst. Biol., 2010)

Further developments towards a genome-scale metabolic model of yeast - Paul D. Dobson; Kieran Smallbone; Daniel Jameson; Evangelos Simeonidis; Karin Lanthaler; Pinar Pir; Chuan Lu; Neil Swainston; Warwick B. Dunn; Paul Fisher; Duncan Hull; Marie Brown; et al. (BMC Syst. Biol., 2010)

A Model to Investigate the Feasibility of Fdg as a Surrogate Marker of Hypoxia - Catherine J. Kelly; Kieran Smallbone; Tiina Roose; Michael Brady (Proceedings of the 2007 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, Washington, DC, USA, April 12-16, 2007, 2007)