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2020 – today
- 2024
[j44]Xinyue Han
, Surendra Maharjan, Jie Chen, Yi Zhao, Yi Qi, Leonard E. White, G. Allan Johnson, Nian Wang:
High-resolution diffusion magnetic resonance imaging and spatial-transcriptomic in developing mouse brain. NeuroImage 297: 120734 (2024)- 2022
- [j43]Stephanie Crater, Surendra Maharjan, Yi Qi, Qi Zhao, Gary P. Cofer, James C. Cook, G. Allan Johnson, Nian Wang:
Resolution and b value dependent structural connectome in ex vivo mouse brain. NeuroImage 255: 119199 (2022) - 2021
- [j42]Syed M. Adil, Evan Calabrese, Lefko T. Charalambous, James J. Cook, Shervin Rahimpour, Ahmet Fatih Atik, Gary P. Cofer, Beth A. Parente, G. Allan Johnson, Shivanand P. Lad, Leonard E. White:
A high-resolution interactive atlas of the human brainstem using magnetic resonance imaging. NeuroImage 237: 118135 (2021) - [j41]G. Allan Johnson, Rick Laoprasert, Robert J. Anderson, Gary P. Cofer, James J. Cook, Forrest Pratson, Leonard E. White:
A multicontrast MR atlas of the Wistar rat brain. NeuroImage 242: 118470 (2021) - 2020
- [j40]Nian Wang, Leonard E. White, Yi Qi, Gary P. Cofer, G. Allan Johnson:
Cytoarchitecture of the mouse brain by high resolution diffusion magnetic resonance imaging. NeuroImage 216: 116876 (2020) - [j39]Nian Wang, Robert J. Anderson, David G. Ashbrook, Vivek Gopalakrishnan, Youngser Park, Carey E. Priebe, Yi Qi, Rick Laoprasert, Joshua T. Vogelstein, Robert W. Williams, G. Allan Johnson:
Variability and heritability of mouse brain structure: Microscopic MRI atlases and connectomes for diverse strains. NeuroImage 222: 117274 (2020)
2010 – 2019
- 2019
- [j38]Alexandra Badea, Wenlin Wu, Jordan Shuff, Michele Wang, Robert J. Anderson, Yi Qi, G. Allan Johnson, Joan G. Wilson, Serge Koudoro, Eleftherios Garyfallidis, Carol A. Colton, David B. Dunson:
Identifying Vulnerable Brain Networks in Mouse Models of Genetic Risk Factors for Late Onset Alzheimer's Disease. Frontiers Neuroinformatics 13: 72 (2019) - [j37]Ahmet Fatih Atik, Evan Calabrese, Robert Gramer, Syed M. Adil, Shervin Rahimpour, Promila Pagadala, G. Allan Johnson, Shivanand P. Lad:
Structural mapping with fiber tractography of the human cuneate fasciculus at microscopic resolution in cervical region. NeuroImage 196: 200-206 (2019) - [j36]Robert J. Anderson, James J. Cook, Natalie A. Delpratt, John C. Nouls, Bin Gu, James O. McNamara, Brian B. Avants, G. Allan Johnson, Alexandra Badea:
Small Animal Multivariate Brain Analysis (SAMBA) - a High Throughput Pipeline with a Validation Framework. Neuroinformatics 17(3): 451-472 (2019) - 2017
- [i1]Robert J. Anderson, James J. Cook, Natalie A. Delpratt, John C. Nouls, Bin Gu, James O. McNamara, Brian B. Avants, G. Allan Johnson, Alexandra Badea:
An HPC Pipeline with Validation Framework for Small Animal Multivariate Brain Analysis (SAMBA). CoRR abs/1709.10483 (2017) - 2016
- [j35]Hongjiang Wei, Luke Xie, Russell Dibb, Wei Li, Kyle Decker, Yuyao Zhang, G. Allan Johnson, Chunlei Liu:
Imaging whole-brain cytoarchitecture of mouse with MRI-based quantitative susceptibility mapping. NeuroImage 137: 107-115 (2016) - [c13]G. Allan Johnson, Robert J. Anderson, James J. Cook, Christopher Long, Alexandra Badea:
Image-processing pipelines: applications in magnetic resonance histology. Image Processing 2016: 978407 - 2015
- [j34]Eszter A. Papp, Trygve B. Leergaard, Evan Calabrese, G. Allan Johnson, Jan G. Bjaalie:
Addendum to "Waxholm Space atlas of the Sprague Dawley rat brain" [NeuroImage 97 (2014) 374-386]. NeuroImage 105: 561-562 (2015) - [j33]Evan Calabrese, Alexandra Badea, Christopher L. Coe, Gabriele R. Lubach, Yundi Shi, Martin Andreas Styner, G. Allan Johnson:
A diffusion tensor MRI atlas of the postmortem rhesus macaque brain. NeuroImage 117: 408-416 (2015) - 2014
- [j32]Ioannis Argyridis, Wei Li, G. Allan Johnson, Chunlei Liu:
Quantitative magnetic susceptibility of the developing mouse brain reveals microstructural changes in the white matter. NeuroImage 88: 134-142 (2014) - [j31]Eszter A. Papp, Trygve B. Leergaard, Evan Calabrese, G. Allan Johnson, Jan G. Bjaalie:
Waxholm Space atlas of the Sprague Dawley rat brain. NeuroImage 97: 374-386 (2014) - [j30]Wei Cao, Wei Li, Hui Han, Shonagh K. O'Leary-Moore, Kathleen K. Sulik, G. Allan Johnson, Chunlei Liu:
Prenatal alcohol exposure reduces magnetic susceptibility contrast and anisotropy in the white matter of mouse brains. NeuroImage 102: 748-755 (2014) - [c12]Samuel M. Johnston, G. Allan Johnson, Cristian T. Badea:
Helical dual source cone-beam micro-CT. ISBI 2014: 177-180 - 2013
- [j29]Evan Calabrese, G. Allan Johnson, Charles Watson:
An ontology-based segmentation scheme for tracking postnatal changes in the developing rodent brain with MRI. NeuroImage 67: 375-384 (2013) - [j28]Evan Calabrese, Alexandra Badea, Charles Watson, G. Allan Johnson:
A quantitative magnetic resonance histology atlas of postnatal rat brain development with regional estimates of growth and variability. NeuroImage 71: 196-206 (2013) - [j27]Evan Calabrese, G. Allan Johnson:
Diffusion tensor magnetic resonance histology reveals microstructural changes in the developing rat brain. NeuroImage 79: 329-339 (2013) - [c11]Darin P. Clark, Alexandra Badea, G. Allan Johnson, Cristian T. Badea:
Constructing a 4D murine cardiac micro-CT atlas for automated segmentation and phenotyping applications. Image Processing 2013: 86691P - 2012
- [j26]Dimitrios Perperidis, Elizabeth Bucholz, G. Allan Johnson, Christakis Constantinides:
Morphological studies of the murine heart based on probabilistic and statistical atlases. Comput. Medical Imaging Graph. 36(2): 119-129 (2012) - [j25]Chunlei Liu, Wei Li, Bing Wu, Yi Jiang, G. Allan Johnson:
3D fiber tractography with susceptibility tensor imaging. NeuroImage 59(2): 1290-1298 (2012) - [j24]G. Allan Johnson, Evan Calabrese, Alexandra Badea, George Paxinos, Charles Watson:
A multidimensional magnetic resonance histology atlas of the Wistar rat brain. NeuroImage 62(3): 1848-1856 (2012) - [j23]Alexandra Badea, Sally L. Gewalt, Brian B. Avants, James J. Cook, G. Allan Johnson:
Quantitative mouse brain phenotyping based on single and multispectral MR protocols. NeuroImage 63(3): 1633-1645 (2012) - [c10]Darin P. Clark, G. Allan Johnson, Cristian T. Badea:
Denoising of 4D cardiac micro-CT data using median-centric bilateral filtration. Image Processing 2012: 83143Z - 2011
- [j22]Chunlei Liu, Wei Li, G. Allan Johnson, Bing Wu:
High-field (9.4 T) MRI of brain dysmyelination by quantitative mapping of magnetic susceptibility. NeuroImage 56(3): 930-938 (2011) - [j21]Yi Jiang, G. Allan Johnson:
Microscopic diffusion tensor atlas of the mouse brain. NeuroImage 56(3): 1235-1243 (2011) - [j20]Jelle Veraart, Trygve B. Leergaard, Bjørnar T. Antonsen, Wim Van Hecke, Ines Blockx, Ben Jeurissen, Yi Jiang, Annemie van der Linden, G. Allan Johnson, Marleen Verhoye, Jan Sijbers:
Population-averaged diffusion tensor imaging atlas of the Sprague Dawley rat brain. NeuroImage 58(4): 975-983 (2011) - [j19]Michael Hawrylycz, Richard A. Baldock, Albert Burger, Tsutomu Hashikawa, G. Allan Johnson, Maryann E. Martone, Lydia Ng, Christopher Lau, Stephen D. Larson, Jonathan Nissanov, Luis Puelles, Seth Ruffins, Fons J. Verbeek, Ilya Zaslavsky, Jyl Boline:
Digital Atlasing and Standardization in the Mouse Brain. PLoS Comput. Biol. 7(2) (2011) - 2010
- [j18]Alexandra Badea, G. Allan Johnson, Joanna L. Jankowsky:
Remote sites of structural atrophy predict later amyloid formation in a mouse model of Alzheimer's disease. NeuroImage 50(2): 416-427 (2010) - [j17]Yi Jiang, G. Allan Johnson:
Microscopic diffusion tensor imaging of the mouse brain. NeuroImage 50(2): 465-471 (2010) - [j16]Gabriel P. Howles, Yi Qi, G. Allan Johnson:
Ultrasonic disruption of the blood-brain barrier enables in vivo functional mapping of the mouse barrel field cortex with manganese-enhanced MRI. NeuroImage 50(4): 1464-1471 (2010) - [j15]G. Allan Johnson, Alexandra Badea, Jeffrey Brandenburg, Gary P. Cofer, Boma Fubara, Song Liu, Jonathan Nissanov:
Waxholm Space: An image-based reference for coordinating mouse brain research. NeuroImage 53(2): 365-372 (2010) - [c9]Christakis Constantinides, Nicolas Aristokleous, G. Allan Johnson, Dimitris Perperides:
Static and dynamic cardiac modelling: initial strides and results towards a quantitatively accurate mechanical heart model. ISBI 2010: 496-499
2000 – 2009
- 2009
- [j14]Alexandra Badea, G. Allan Johnson, Robert W. Williams:
Genetic dissection of the mouse brain using high-field magnetic resonance microscopy. NeuroImage 45(4): 1067-1079 (2009) - [j13]Allan MacKenzie-Graham, Seema K. Tiwari-Woodruff, Gaurav Sharma, Cynthia Aguilar, Kieumai T. Vo, Lauren V. Strickland, Laurie Morales, Boma Fubara, Melanie Martin, Russell E. Jacobs, G. Allan Johnson, Arthur W. Toga, Rhonda R. Voskuhl:
Purkinje cell loss in experimental autoimmune encephalomyelitis. NeuroImage 48(4): 637-651 (2009) - [j12]Jiayu Song, Yanhui Liu, Sally L. Gewalt, Gary P. Cofer, G. Allan Johnson, Qing Huo Liu:
Least-Square NUFFT Methods Applied to 2-D and 3-D Radially Encoded MR Image Reconstruction. IEEE Trans. Biomed. Eng. 56(4): 1134-1142 (2009) - 2008
- [j11]Cristian T. Badea, Arthur W. Wetzel, Nilesh Mistry, Stuart M. Pomerantz, Démian Nave, G. Allan Johnson:
Left ventricle volume measurements in cardiac micro-CT: The impact of radiation dose and contrast agent. Comput. Medical Imaging Graph. 32(3): 239-250 (2008) - [j10]Anjum A. Sharief, Alexandra Badea, Anders M. Dale, G. Allan Johnson:
Automated segmentation of the actively stained mouse brain using multi-spectral MR microscopy. NeuroImage 39(1): 136-145 (2008) - [j9]Ming De Lin, Lutao Ning, Cristian T. Badea, Nilesh Mistry, Yi Qi, G. Allan Johnson:
A High-Precision Contrast Injector for Small Animal X-Ray Digital Subtraction Angiography. IEEE Trans. Biomed. Eng. 55(3): 1082-1091 (2008) - 2007
- [j8]Alexandra Badea, Peter Nicholls, G. Allan Johnson, William C. Wetsel:
Neuroanatomical phenotypes in the Reeler mouse. NeuroImage 34(4): 1363-1374 (2007) - [j7]G. Allan Johnson, Anjum Ali-Sharief, Alexandra Badea, Jeffrey Brandenburg, Gary P. Cofer, Boma Fubara, Sally L. Gewalt, Laurence W. Hedlund, Lucy Upchurch:
High-throughput morphologic phenotyping of the mouse brain with magnetic resonance histology. NeuroImage 37(1): 82-89 (2007) - [j6]Alexandra Badea, A. A. Ali-Sharief, G. Allan Johnson:
Morphometric analysis of the C57BL/6J mouse brain. NeuroImage 37(3): 683-693 (2007) - 2006
- [c8]Ming De Lin, Laurence Hedlund, G. Allan Johnson:
Micro radiography imaging of the rodent with phenylephrine induced vascular hypertension. ISBI 2006: 610-613 - [c7]Nilesh Mistry, Ming De Lin, Laurence Hedlund, G. Allan Johnson:
Multimodality imaging of pulmonary function in the rodent. ISBI 2006: 920-923 - [c6]Cristian T. Badea, Laurence Hedlund, Ming De Lin, Julie F. Boslego, G. Allan Johnson:
Functional imaging in small animals using tomographic digital subtraction angiography. ISBI 2006: 1208-1211 - 2005
- [j5]Michel Cyr, Marc G. Caron, G. Allan Johnson, Aki Laakso:
Magnetic resonance imaging at microscopic resolution reveals subtle morphological changes in a mouse model of dopaminergic hyperfunction. NeuroImage 26(1): 83-90 (2005) - [j4]Anjum A. Sharief, Anders M. Dale, Alexandra Badea, G. Allan Johnson:
Automated segmentation of neuroanatomical structures in multispectral MR microscopy of the mouse brain. NeuroImage 27(2): 425-435 (2005) - 2004
- [c5]Wilfried Mai, Cristian T. Badea, Charles Wheeler, Laurence Hedlund, G. Allan Johnson:
Effects of Breathing Motion On The Spatial Resolution In Microscopic Imaging Techniques of Rodents. ISBI 2004: 472-475 - [c4]Cristian T. Badea, Laurence Hedlund, Charles Wheeler, Wilfried Mai, G. Allan Johnson:
Volumetric Micro-CT System for In Vivo Microscopy. ISBI 2004: 1377-1380 - [c3]Ming De Lin, Cristian T. Badea, G. Allan Johnson:
Optimized Radiographic Spectra for Digital Subtraction Angiography in the Mouse. ISBI 2004: 1412-1419 - 2002
- [c2]G. Allan Johnson, Gary P. Cofer, Sally L. Gewalt, Laurence Hedlund:
An engineering approach to image-based phenotyping. ISBI 2002: 381-383 - 2001
- [c1]Arthur W. Wetzel, Stuart M. Pomerantz, Démian Nave, Walter Meixner, G. Allan Johnson:
Distributed Multiuser Visualization of Time Varying Anatomical Data. AIPR 2001: 109-114
1990 – 1999
- 1998
- [j3]Hui H. Qiu, Laurence W. Hedlund, Michael R. Neuman, C. R. Edwards, Robert D. Black, Gary P. Cofer, G. Allan Johnson:
Measuring the progression of foreign-body reaction to silicone implants using in vivo MR microscopy. IEEE Trans. Biomed. Eng. 45(7): 921-927 (1998) - 1997
- [j2]S. E. Hurlston, Gary P. Cofer, G. Allan Johnson:
Optimized radiofrequency coils for increased signal-to-noise ratio in magnetic resonance microscopy. Int. J. Imaging Syst. Technol. 8(3): 277-284 (1997) - [j1]Hui H. Qiu, Gary P. Cofer, Laurence W. Hedlund, G. Allan Johnson:
Automated feedback control of body temperature for small animal studies with MR microscopy. IEEE Trans. Biomed. Eng. 44(11): 1107-1113 (1997)
Coauthor Index
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