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2020 – today
- 2024
[j5]Vijini Mallawaarachchi
, Anuradha Wickramarachchi, Hansheng Xue, Bhavya Nalagampalli Papudeshi, Susanna R. Grigson, George Bouras, Rosa E. Prahl, Anubhav Kaphle, Andrey Verich, Berenice Talamantes-Becerra, Elizabeth A. Dinsdale, Robert A. Edwards:
Solving genomic puzzles: computational methods for metagenomic binning. Briefings Bioinform. 25(5) (2024)- [c11]Jianxing Ma, Zhibo Xiao, Luwei Yang, Hansheng Xue, Xuanzhou Liu, Wen Jiang, Wei Ning, Guannan Zhang:
Modeling User Intent Beyond Trigger: Incorporating Uncertainty for Trigger-Induced Recommendation. CIKM 2024: 4743-4751 - [c10]Hansheng Xue, Vijini Mallawaarachchi, Lexing Xie, Vaibhav Rajan:
Encoding Unitig-level Assembly Graphs with Heterophilous Constraints for Metagenomic Contigs Binning. ICLR 2024 - [c9]Aishwarya Jayagopal, Hansheng Xue, Ziyang He, Robert J. Walsh, Krishna Kumar Hariprasannan, David Shao Peng Tan, Tuan Zea Tan, Jason J. Pitt, Anand D. Jeyasekharan, Vaibhav Rajan:
Personalised Drug Identifier for Cancer Treatment with Transformers using Auxiliary Information. KDD 2024: 5138-5149 - [i7]Aishwarya Jayagopal, Hansheng Xue, Ziyang He, Robert J. Walsh, Krishna Kumar Hariprasannan, David Shao Peng Tan, Tuan Zea Tan, Jason J. Pitt, Anand D. Jeyasekharan, Vaibhav Rajan:
Personalised Drug Identifier for Cancer Treatment with Transformers using Auxiliary Information. CoRR abs/2402.10551 (2024) - [i6]Jianxing Ma, Zhibo Xiao, Luwei Yang, Hansheng Xue, Xuanzhou Liu, Wen Jiang, Wei Ning, Guannan Zhang:
Modeling User Intent Beyond Trigger: Incorporating Uncertainty for Trigger-Induced Recommendation. CoRR abs/2408.03091 (2024) - 2022
- [c8]Hansheng Xue, Vijini Mallawaarachchi, Yujia Zhang, Vaibhav Rajan, Yu Lin:
RepBin: Constraint-Based Graph Representation Learning for Metagenomic Binning. AAAI 2022: 4637-4645 - [c7]Hansheng Xue, Vaibhav Rajan, Yu Lin:
Graph Coloring via Neural Networks for Haplotype Assembly and Viral Quasispecies Reconstruction. NeurIPS 2022 - [i5]Hansheng Xue, Vaibhav Rajan, Yu Lin:
Graph Coloring via Neural Networks for Haplotype Assembly and Viral Quasispecies Reconstruction. CoRR abs/2210.12158 (2022) - 2021
- [j4]Jiajie Peng, Hansheng Xue, Zhongyu Wei, Idil Tuncali, Jianye Hao, Xuequn Shang:
Integrating multi-network topology for gene function prediction using deep neural networks. Briefings Bioinform. 22(2): 2096-2105 (2021) - [c6]Hansheng Xue, Luwei Yang, Vaibhav Rajan, Wen Jiang, Yi Wei, Yu Lin:
Multiplex Bipartite Network Embedding using Dual Hypergraph Convolutional Networks. WWW 2021: 1649-1660 - [i4]Hansheng Xue, Luwei Yang, Vaibhav Rajan, Wen Jiang, Yi Wei, Yu Lin:
Multiplex Bipartite Network Embedding using Dual Hypergraph Convolutional Networks. CoRR abs/2102.06371 (2021) - [i3]Hansheng Xue, Vijini Mallawaarachchi, Yujia Zhang, Vaibhav Rajan, Yu Lin:
RepBin: Constraint-based Graph Representation Learning for Metagenomic Binning. CoRR abs/2112.11696 (2021) - 2020
- [c5]Hansheng Xue, Luwei Yang, Wen Jiang, Yi Wei, Yi Hu, Yu Lin:
Modeling Dynamic Heterogeneous Network for Link Prediction Using Hierarchical Attention with Temporal RNN. ECML/PKDD (1) 2020: 282-298 - [i2]Hansheng Xue, Luwei Yang, Wen Jiang, Yi Wei, Yi Hu, Yu Lin:
Modeling Dynamic Heterogeneous Network for Link Prediction using Hierarchical Attention with Temporal RNN. CoRR abs/2004.01024 (2020)
2010 – 2019
- 2019
- [j3]Jiajie Peng, Guilin Lu, Hansheng Xue, Tao Wang, Xuequn Shang:
TS-GOEA: a web tool for tissue-specific gene set enrichment analysis based on gene ontology. BMC Bioinform. 20-S(18): 572:1-572:7 (2019) - [j2]Hansheng Xue, Jiajie Peng, Xuequn Shang:
Predicting disease-related phenotypes using an integrated phenotype similarity measurement based on HPO. BMC Syst. Biol. 13-S(2): 34:1-34:12 (2019) - [c4]Hansheng Xue, Jiajie Peng, Xuequn Shang:
Towards Gene Function Prediction via Multi-Networks Representation Learning. AAAI 2019: 10069-10070 - [c3]Hansheng Xue, Jiajie Peng, Jiying Li, Xuequn Shang:
Integrating Multi-Network Topology via Deep Semi-supervised Node Embedding. CIKM 2019: 2117-2120 - 2018
- [c2]Jiajie Peng, Guilin Lu, Hansheng Xue, Tao Wang, Xuequn Shang:
TSGOE: A web tool for tissue-specific gene ontology enrichment. BIBM 2018: 1266-1269 - [i1]Hansheng Xue, Jiajie Peng, Xuequn Shang:
Deep Feature Learning of Multi-Network Topology for Node Classification. CoRR abs/1809.02394 (2018) - 2017
- [j1]Jiajie Peng, Hansheng Xue, Yukai Shao, Xuequn Shang, Yadong Wang, Jin Chen:
A novel method to measure the semantic similarity of HPO terms. Int. J. Data Min. Bioinform. 17(2): 173-188 (2017) - 2016
- [c1]Jiajie Peng, Hansheng Xue, Yukai Shao, Xuequn Shang, Yadong Wang, Jin Chen:
Measuring phenotype semantic similarity using Human Phenotype Ontology. BIBM 2016: 763-766
Coauthor Index
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