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Operating on Genomic Ranges Using BEDOPS
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由 S Neph 著作2016被引用 12 次 — The BEDOPS toolkit offers a broad spectrum of fundamental analysis capabilities to query, operate on, and compare quantitatively genomic data sets of any size ...
Operating on Genomic Ranges Using BEDOPS
Springer
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由 S Neph 著作2016被引用 12 次 — The BEDOPS toolkit offers a broad spectrum of fundamental analysis capabilities to query, operate on, and compare quantitatively genomic data sets of any size ...
Operating on Genomic Ranges Using BEDOPS
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The BEDOPS toolkit offers a broad spectrum of fundamental analysis capabilities to query, operate on, and compare quantitatively genomic data sets of any ...
Operating on genomic ranges using BEDOPS | Request PDF
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The BEDOPS toolkit offers a broad spectrum of fundamental analysis capabilities to query, operate on, and compare quantitatively genomic data sets of any size ...
6.1.1.1.1. Input
BEDOPS
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BEDOPS
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bedops is a core tool for finding relationships between two or more genomic datasets. This is an important category of problems to solve.
How to properly sort GRanges?
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2014年11月14日 — Firstly, verify that seqlevels are sorted: gr <- sortSeqlevels(gr). Then, just sort your GRanges object: gr <- sort(gr). Simple as that.
BEDOPS: high-performance genomic feature operations
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https://pmc.ncbi.nlm.nih.gov › articles
National Institutes of Health (NIH) (.gov)
https://pmc.ncbi.nlm.nih.gov › articles
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由 S Neph 著作2012被引用 1003 次 — We introduce BEDOPS, a software suite for common genomic analysis tasks which offers improved flexibility, scalability and execution time characteristics.
Useful software utilities for computational genomics
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由 S Samarajiwa 著作2019 — and shuffle genomic intervals from multiple files in widely-used genomic file ... ○ Neph et al., BEDOPS: high-performance genomic feature operations.
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7. Summary — BEDOPS v2.4.41 - Read the Docs
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Reports the genomic range of overlapping elements from map-file . 1, 2, 3 ... Reports the intervals found in exactly one input file. 2, No imposed limit, 3.
bedops · csd3 - cambridge-ceu
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Neph S, et al. (2016). Operating on Genomic Ranges Using BEDOPS, in Math E, Davis S (Ed). Statistical Genomics-Methods and Protocols. Humana Press. Chapter 14, ...