[en] Highlights: • Metagenomics was used to study MRGs during thermophilic composting of manure. • Bacterial succession was the main driver of MRG dynamics. • Class 1 integron played a role in maintaining MRGs at the cooling phase. • E. coli carried a large number of MRGs. • Thermophilic composting reduced the risk of MRG dissemination. -- Abstract: Metal(loid) resistance genes (MRGs) play important roles in conferring resistance to metal(loid)s in bacterial communities. How MRGs respond to bacterial succession during manure composting remains largely unknown. Metagenomics was used in the present study to investigate the compositional changes of MRGs, their candidate hosts and association with integrons during thermophilic composting of chicken manures. MRGs conferring resistance to 20 metal(loid)s were detected, and their diversity and abundance (normalized to the abundance of 16S rRNA genes) were significantly reduced during composting. MRGs associated with integron were exclusively observed in proteobacterial species. Class 1 integron likely played an important role in maintaining mercury-resistance mer operon genes in composts. Escherichia coli harbored the most abundant MRGs in the original composting material, whereas species of Actinobacteria and Bacilli became more important in carrying MRGs during the late phases. There were significant linear relationships between the relative abundance of some specific bacterial species (E. coli, Actinobacteria species and Enterococcus faecium) and the abundance of MRGs they potentially harbored. The succession of these bacteria contributed to an overall linear regression between the relative abundance of all predicted candidate hosts and the abundance of total MRGs. Our results suggest that the succession of bacterial community was the main driver of MRG dynamics during thermophilic composting.

[en] The effect of twelve weeks of composting on the mobility and bioavailability of cadmium in six composts containing sewage sludge, wood chips and grass was studied, along with the cadmium immobilization capacity of compost. Two different soils were used and Cd accumulation measured in above-ground oat biomass (Avena sativa L.). Increasing pH appears to be an important cause of the observed decreases in available cadmium through the composting process. A pot experiment was performed with two different amounts of compost (9.6 and 28.8 g per kg of soil) added into Fluvisol with total Cd 0.255 mg kg^-1, and contaminated Cambisol with total Cd 6.16 mg kg^-1. Decrease of extractable Cd (0.01 mol l^-1 CaCl₂) was found in both soils after compost application. The higher amount of compost immobilized an exchangeable portion of Cd (0.11 mol l^-1 CH₃COOH extractable) in contaminated Cambisol unlike in light Fluvisol. The addition of a low amount of compost decreased the content of Cd in associated above-ground oat biomass grown in both soils, while a high amount of compost decreased the Cd content in oats only in the Cambisol.

[en] Highlights: • Legislation establishes tolerance margins for the nutrient content on the compost. • Nutrient deficiency and nutrients excess on the organic compost can be harmful. • 36 batches of compost produced at a composting unit in Brazil were evaluated. • Nutrient variation among compost batches exceeds tolerance margins. • Pile initial condition and composting operation explain most variation. The aim of the study was to evaluate if a composting unit on a commercial scale can produce, during 15 months, an organic compost according to the guarantees and tolerance margins required by Brazilian legislation for its nutrient content. For this, a food and tree pruning waste compost produced in a composting unit located in Belo Horizonte (Brazil) was evaluated. Noncompliance regarding tolerance margins for nitrogen, phosphorus and potassium were 3, 17 and 28% on a dry matter basis and 19, 31 and 33% on a fresh matter basis. Noncompliance can be mainly attributed to difference in the initial condition among piles (mass used in the piles preparation, proportion of food and pruning waste, initial nutrient content in the mixture, etc.) and differences in the operational activities among the piles. Together, these factors explained 64 to 86% of the variation in the nutrient content of the compost.

[en] Highlights: • The succession of heavy metal resistant bacteria in poultry manure compost was studied. • 6% chicken manure biochar addition effectively triggered the bacterial community abundance. • Proteobacteria, Actinobacteria, and Bacteroidetes were the three dominant phyla. • 6% biochar amendment significantly reduce the mobility of HMRB abundance in compost. The purpose of this study was to investigate the heavy metal resistant bacteria (HMRB) community succession and bacterial activity in poultry manure (PM) composting. Five different concentration of chicken manure biochar (CMB) at 0%, 2%, 4%, 6%, and 10% on a dry weight basis was applied with initial feedstock (poultry manure + wheat straw) and indicated with T1, T2, T3, T4, and T5. In addition, high-throughput sequencing, principal coordinate analysis, and correlation analysis were used to analyze the evolution of HMRB communities during composting. The study indicated that crucial phyla were Proteobacteria, Actinobacteria, Bacteroidetes, and Firmicutes. The bacterial diversity in the CMB amendment treatment was higher than in the control treatment, and T4 treatment has the highest among all CMB applied treatments. Moreover, results from CCA indicated that T4 and T5 treatments quickly enters the high-temperature period which is maintained for 5 days, and is significantly positively correlated with Proteobacteria, and Actinobacteria. These findings offer insight into potential strategies to understand the succession of HMRBs during PM reuse. Overall, the above results show the addition of 6% biochar (T4) was potentially beneficial to enrich the abundance of bacterial community to improve composting environment quality and composting efficiency. In addition, effective to immobilized the heavy metals and HMRB in the end product.

[en] Two composting processes were carried out; they lasted for about 165 days. In one of the processes the decomposition of the material was performed only by microorganisms only (direct composting) and in the other one, by microorganisms and earthworms -Eisenla foetida- (indirect composting). The first one was carried out in a composting system called ^camas^and the indirect one was carried out in its initial phase in a system of ^panelas^, then the wastes were transferred to a ^cama^. The materials were treated in both processes with lime, ammonium nitrate and microorganisms. Periodical samples were taken from different places of the pile and a temperature control was made weekly. The following physicochemical parameters were analyzed in each sample: Humidity, color, pH soil : water in ratios of 1:5 and 1:10, ash, organic matter, CIC, contents of carbon and nitrogen and C/N ratio. In the aqueous extract, C/N ratio and percentage of hydro solubles were analyzed. It was also made a germination assay taking measurements of the percentage of garden cress seeds (Lepidium sativum) that germinated in the aqueous extract. The parameters variation in each process let us to establish that the greatest changes in the material happened in the initial phases of the process (thermophilic and mesophilic phases); the presence of microorganisms was the limiting factor in the dynamic of the process; on the other hand, the earthworm addition did not accelerate the mineralization of organic matter. The results let us to establish that the color determination is not an effective parameter in order to evaluate the degree of maturity of the compost. Other parameters such as temperature and germination percentage can be made as routine test to determine the process rate. Determination of CIC, ash and hydro solubles content are recommended to evaluate the optimal maturity degree in the material. It is proposed changes such as to reduce the composting time to a maximum of 100 days and to make the composting in a system of ^panelas

[en] Highlights: • Lactam structure of penicillin was thoroughly degraded by hydrothermal treatment. • Total ARGs in the samples with or without HT-PFR were decreased to equal level. • Abundance of Firmicutes increased with the increasing proportions of HT-PFR. • Most potential pathogenic and drug-resistant bacteria in the piles were inhibited. Combining hydrothermal treatment and composting is an effective method to dispose of penicillin fermentation residue (PFR), but the safety and related mechanism are still unclear. In this study, penicillin solution was hydrothermally treated to decipher its degradation mechanism, and then hydrothermally treated PFR (HT-PFR) was mixed with bulking agents at ratios of 2:0 (CK), 2:1.5 (T1), and 2:5 (T2) to determine the absolute abundance of antibiotic resistance genes (ARGs) and the succession of bacterial community. Results showed that penicillin was degraded to several new compounds without the initial lactam structure after hydrothermal treatment. During composting, temperature and pH of the composts increased with the raising of HT-PFR proportion, except the pH at days 2. After 52 days of composting, the absolute copies of ARGs (blaTEM, blaCMY2, and blaSFO) and the relative abundance of bacteria related to pathogens were reduced significantly (P < 0.05). Especially, the total amount of ARGs in the samples of CK and T1 were decreased to equal level (around 5 log₁₀ copies/g), which indicated that more ARGs were degraded in the latter by the composting process. In the CK samples, Bacteroidetes and Proteobacteria accounted for ~69.8% of the total bacteria, but they were gradually replaced by Firmicutes with increasing proportions of HT-PFR, which can be caused by the high protein content in PFR. Consisting with bacterial community, more gram-positive bacteria were observed in T1 and T2, and most of them are related to manganese oxidation and chitinolysis. As composting proceeded, bacteria having symbiotic or pathogenic relationships with animals and plants were reduced, but those related to ureolysis and cellulolysis were enriched. Above all, hydrothermal treatment is effective in destroying the lactam structure of penicillin, which makes that most ARGs and pathogenic bacteria are eliminated in the subsequent composting.

[en] A large amount of organic compost, produced with agricultural and breeding industry wastes by composting, is widely used in agriculture in China. The microbial decomposition of organic compost is a major flux in the nutrition cycle in sustainable agricultural soils. To explore the mechanism of organic compost mineralization in soil, in situ decomposition experiments of organic compost buried in soils were arranged in three different latitude regions located in Jilin, Jiangsu, and Yunnan in China. The results showed that organic compost had different decomposition rates at the three different sites, with the highest decomposition rate in Yunnan, followed by Jiangsu and Jilin. The decomposition rates of unsterilized organic compost were significantly greater than those of sterilized organic compost, indicating that the microorganisms in organic compost also made important contributions to the decomposition process. The soil microbial diversity and community structure among the three sites were significantly different. The fungal community, especially fungal richness, rather than the bacterial community in the soil, plays a major role in the decomposition of organic compost. The annual average temperature is an important environmental factor affecting fungal richness. This study will provide a reference for formulating agricultural fertilization models in different regions.

[en] Residues or wastes are a problem to the cities, owing to its collect and disposal produce many negative effects in public health and the environment as odors, microorganism (pathogens), vectors (flies, rodents and mosquitoes), and others. To solve this problem have been propose mainly two alternatives: 1. Sanitary landfills and 2. Recycling. To recover the residues as biodegradable as not-biodegradable, exist alternatives as composting (fermentation process or aerobic oxidation) and recycling - reuse, respectively. The composting process in aspects as the required conditions to that the organism acts efficiently as control of temperature (between 40-75 centigrade degrees), feed (carbon, nitrogen and other organic matter), aeration (by mixing or turning), control of moisture (between 50-60%), are present. Methodology aspects to composting also are described

[en] Highlights: • In situ heavy metals passivation of thermophiles was demonstrated in composting. • Biomineralization of Pb(II) into chloropyromorphite by T. thermophiles was revealed. • Thermophilic biomineralization strategy was proposed for in situ Pb passivation. Composting is an effective technology for the disposal and utilization of solid biowastes. However, conventional composting is inefficient for the passivation of heavy metals in solid biowastes, thus limiting the applications of compost derived from solid biowaste. Here, a thermophilic biomineralization strategy was proposed and demonstrated during sludge composting for in situ heavy metals passivation via thermophiles inoculation. It was found that Thermus thermophilus could promote the transformation of Pb(II) into the most stable chloropyromorphite [Pb₅(PO₄)₃Cl, K_sp = 10^-84.4] during composting. After 40 days of composting with T. thermophilus FAFU013, the most insoluble residual fractions of Pb increased by 16.0% (from 76.5% to 92.5%), which was approximately 3 times higher than that of the uninoculated control. The DTPA-extractable Pb decreased to 11.5%, which was 14.4% less compared with the uninoculated control, indicating a significant Pb passivation by inoculation of T. thermophilus FAFU013. A series of batch experiments revealed that Pb(II) could be rapidly accumulated by selective biosorption and gradually transformed into chloropyromorphite through the biomineralization of T. thermophilus FAFU013. This study provides new insight into the mechanism of heavy metal passivation during composting and the problem associated with the disposal of Pb-contaminated solid biowastes through the biomineralization of thermophiles.

[en] Highlights: • BC plus BV treatment showed the highest reduction of ARGs and MGEs. • Nitrogen conversion had an important effect on ARG and MRG profiles. • Fate of ARGs was mainly driven by MGEs. • cusA and copA confirmed the selection pressure of heavy metals. -- Abstract: The application of compost in agriculture has led to the accumulation of antibiotic resistance genes (ARGs) and heavy metal resistance genes (MRGs) in the soil environment. In this study, the response of ARGs and MRGs to bamboo charcoal (BC) and bamboo vinegar (BV) during aerobic composting was investigated. Results showed that BC + BV treatment reduced the abundances of ARGs and mobile genetic elements (MGEs) during the thermophilic period, as well as achieved the lowest rebound during the cooling period. BC + BV promoted the growth of Firmicutes, thereby facilitating the thermophilic period of composting. The rebound of ARGs and MGEs can be explained by increasing the abundance of Actinobacteria and Proteobacteria at the end of composting. Composting reduced the abundances of MRGs comprising pcoA, tcrB, and cueO, whereas cusA and copA indicated the selective pressure imposed by heavy metals on bacteria. The fate of ARGs was mainly driven by MGEs, and heavy metals explained most of the variation in MRGs. Interestingly, nitrogen conversion also had an important effect on ARG and MRG profiles. Our current findings suggest that the addition of BC + BV during compost preparation is an effective method in controlling the mobility of ARGs and MRGs, thereby reducing the environmental problems.