Single Cell Genomics Day: A (Virtual) Practical Workshop
Details
| When: | Friday March 29, 2024 10:00 AM to 5:00 PM EDT |
| Livestream: | All talks will be openly livestreamed on this website and Youtube. Registration is not required. |
Agenda
| 10:00 — 10:40 AM (EST) | Rahul Satija
New York Genome Center (NYGC) and New York University (NYU) Single-cell genomics: Recent advances and future directions |
| 10:40 — 11:20 AM | Jason Buenrostro
Harvard University Single-cell epigenomics and the regulatory control of cells |
| 11:20 AM — 11:40 AM | Marie Schott & Daniel León-Periñán
Max Delbrück Center, Rajewsky lab Open-ST: High-resolution spatial transcriptomics in 3D in your lab |
| 11:40 — 12:00 PM | Coffee break |
| 12:00 — 12:20 PM | Caleb Lareau
Memorial Sloan Kettering Cancer Center Rare cell analyses with single-cell sequencing |
| 12:20 — 12:40 PM | Carol Dalgarno & Longda Jiang
New York Genome Center, Satija lab Single cell perturbation dictionaries |
| 12:40 — 1:00 PM | Kamal Maher
Broad Institute, Wang lab Generalizing single-cell analysis methods to spatial data |
| 1:00 — 1:40 PM | Lunch break |
| 1:40 — 2:20 PM | Xiaowei Zhuang
Harvard University Spatially resolved single-cell genomics & cell atlas of the brain |
| 2:20 — 2:40 PM | Yanay Rosen
Stanford University, Leskovec lab Universal cell embeddings: A foundation model for cell biology |
| 2:40 — 3:00 PM | Coffee break |
| 3:00 — 3:40 PM | Ido Amit
Weizmann Institute The power of ONE: Immunology in the age of spatial and single cell genomics |
| 3:40 — 4:00 PM | Austin Hartman
Stanford University Comparative analysis of multiplexed in situ gene expression profiling technologies |
| 4:00 — 4:20 PM | Sandra Nakandakari
Rockefeller University, Victora lab Universal recording of cellular interactions |
Description
Recent developments in molecular biology, multiplexed imaging, and computational biology have transformed the field of single cell genomics, and have widespread biological applications. However, the breathtaking pace of technology development has given rise to a multitude of molecular protocols, commercial systems, and computational challenges.
The Satija Lab is excited to host the eighth annual Single Cell Genomics Day on Friday, March 29, 2024. This workshop will begin with an overview of exciting developments in the field over the past year, followed by in-depth presentations on exciting methods and techniques. Our goal is to empower you to utilize single cell genomics in your work. The workshop is free and open to beginners and experts alike.
Come to:
- Learn about cutting-edge molecular technologies for multimodal single-cell analysis, scalable perturbation screens, time-resolved measurements, and spatial profiling.
- Discover powerful new computational approaches for analyzing single cell data with AI language models, interpreting and benchmarking spatial technologies, and cross-species atlasing.
- Hear keynote presentations from:
- Ido Amit Weizmann Institute of Science
- Jason Buenrostro Broad Institute
- Xiaowei Zhuang Harvard University
Additional speakers and a full agenda will be posted to this website in advance of the workshop.
Single Cell Genomics Day will take place virtually in 2024. We are able to make all talks freely available via livestream thanks to support from the National Human Genome Research Institute to the Center for Integrated Cellular Analysis.
Additional resources
Below, we list a few useful resources for those who would like to a brief introduction to the field prior to the workshop.