Associate Vice President, Precision Medicine - Advocate Clinical Laboratories
Dear colleagues,
The rapidly growing ACL Genomic and Precision Medicine lab is looking for a Sr Clinical Bioinformatician to join an outstanding team of experts that continues to build a state of the art germline, somatic and PGx testing program. Please use this link to apply: https://lnkd.in/gVseF5vy
If you have any questions, please reach out to the recruiter Kristin SchneiderQuoclinh Nguyen
Apply now for this virtual course where you’ll learn more about the technology, data analysis, tools and resources used in RNA sequencing and transcriptomics: https://lnkd.in/ebPuYEYa
If you’re a life scientist who wants to learn more about processing RNA-seq data and later downstream analysis, you might find this course especially useful. Some experience with R and the Linux-based command line is beneficial, but not essential.
By the end of the course, you will be able to:
- Describe a variety of applications and workflow approaches for NGS technologies
- Apply bioinformatics software and tools to undertake analysis of RNA-seq data
-Evaluate the advantages and limitations of NGS analyses
- Interpret and annotate data with functional information using public resources
We are also able to offer a limited number of registration fee waivers for this course. If you receive a waiver, your registration fee will be reimbursed after you have completed the course.
The course runs from 24 - 28 February 2025. Applications close on 24 November.
#RNA#RNAseq#datascience#commandline#bioionformatics#sciencelearning#sciencetraining#EMBL#EMBLEBI
🔬 Start analyzing your next-generation sequencing (NGS) data with confidence! 💻
Do you think NGS data analysis is difficult? 🚀 Our upcoming workshop will break it down into two simple steps: handling the raw data and then preprocessing it to achieve a high-quality data set for your specific application. Join us to master the first step - ensuring error-free datasets for your analyses.
https://lnkd.in/gTYKWjYP
📆 When: 16. - 18.4.2024 (every day from 09:00 - 17:00)
📍 Where: Prague, centre of Europe
💡 What: Learn to:
Working with the command line
Orientation in NGS data formats
Performing error-free quality control
Preprocessing short-reads
And much more!
🎓 Who Should Attend?
Biologists, bioinformaticians, health professionals and lab workers who want to decode NGS data. Ideal for beginners or those who want to brush up on their skills!
🔍 Prerequisites:
Basic computer literacy and molecular biology knowledge. Bash and terminal familiarity are a plus!
Secure your spot now and kickstart your journey towards NGS data mastery! 💪 #NGS#Bioinformatics#Workshop#DataAnalysis
I want to express my sincere appreciation for the enriching Basic Genomics and Bioinformatics Workshop. It was privilege to attend, and I'm grateful for the valuable insights shared during the sessions and undoubtedly shaped my understanding of genomics. Thank you Biokart India Pvt. Ltd. and MICROBIOLOGY SOCIETY for fostering a conducive learning environment. During this 1-Month Workshop (Dec. 2023 - Jan. 2024) I got to dive deeper into the following topics:
1. Introduction to genomics.
2. DNA and its components.
3. Isolation techniques of DNA.
4. DNA Amplification by PCR Method.
5. Various types of PCR techniques and their implications.
6.Gel electrophoresis, Gel extraction and purification technique.
7. Gel casting.
8. PCR purification techniques.
9. Primers and its uses.
10. Various different universal primers.
11. Application of PCR products and sequencing techniques.
12. Sanger Sequencing processing
13. Sanger Sequencing in 96 well plate
14. Data generation and analysis.
15. Use of various tools for sanger sequencing data analysis.
16. Data generation and analysis of FASTA files.
17. Contig assembly.
18. NCBI Database handling.
19. Generation of phylogenetic tree.
20. Various applications of Sanger Sequencing.
For anyone, but especially, those without access to compute resources- I precalculated a SocialGene search for all 2,502 MIBig BGCs against all culture-collection-available organism genomes in RefSeq (>27,000)
Those results are freely available at https://bgcatlas.pages.dev
My goal was to make it easier for people looking for strains that might produce a known natural product at better titers, or analogs, or just for obtaining strains to study genetic regulation, etc.
Precomputed SocialGene database dumps will freely be available soon, including the 340k RefSeq database and one with >2 million antiSMASH predicted BGCs
I have a new publication on creating large scale Neo4j knowledge graphs for genomics and natural product drug discovery.
Using hundreds of thousands of whole genomes and entire chemical repositories for a proof of concept we show how interconnected large scale multi-omics data can be utilized for drug discovery.
As a shameless plug, I'm on the job market. But I am also performing consulting work with SocialGene and general bioinformatics (genomics, metabolomics, general data science, Python, R, Neo4j, Nextflow, etc.) DM for info.
https://lnkd.in/gp3qkVS9https://lnkd.in/gppRQ9UT
What does a bioinformatician do?
In our latest bioinformatics blog, Operations Bioinformatician Aminata Tengbe talks through the responsibilities of her role and how her work impacts patients.
Read the blog here: https://ow.ly/KglF50SjKvk#bioinformatics
