GenomiqueENS

New insights into chronic myelomonocytic leukemia: Combining short & long-read RNA sequencing with k-mer analysis unveils 4 chimeric RNAs. These results could help advance patient risk stratification & treatment! We collaborated with @IRMB and the CNRGH from the @CEA by constructing the libraries and performing @nanopore sequencing from human samples.New insights into chronic myelomonocytic leukemia: Combining short & long-read RNA sequencing with k-mer analysis unveils 4 chimeric RNAs. These results could help advance patient risk stratification & treatment! We collaborated with @IRMB and the CNRGH from the @CEA by constructing the libraries and performing @nanopore sequencing from human samples.

We are excited to announce that our QC tool for Oxford Nanopore Technologies sequencers #ToulligQC is now available as a wrapper for #Snakemake workflows! 🎉 🎊 Go check it out on the Snakemake wrappers repository: https://lnkd.in/dbQU8grC

Notre plateforme est fière d’être présente à SincellTE 2024 en tant que membre de l'équipe pédagogique ! 🧬

New study reshapes our understanding of P-bodies as active participants in RNA regulation, not just storage! We collaborated with the laboratoire de Biologie du Développement from Sorbonne Université by constructing the libraries and performing Illumina sequencing from human cell lines 🔬 https://lnkd.in/e6RNzMCY

Excited to announce that our QC tool for Oxford Nanopore Technologies sequencers #ToulligQC is now available as an EPI2ME-compatible workflow! 🎉🎉 The EPI2ME Desktop application is easy to use and allows users of any skill level to run their bioinformatic analyses! Go check it out on our github https://lnkd.in/eQPQbmST and EPI2ME Labs https://lnkd.in/e26Bq44A

How do tardigrades survive ionizing radiation? With our collaborators from AVIV at the MNHN, we uncovered DNA repair mechanisms in tardigrades by combining Illumina and Oxford Nanopore Technologies sequencing on 3 species of tardigrade. https://lnkd.in/eru_maPc

New transcriptomic study demonstrates Decitabine as potential antiviral compound against equine rhinopneumonitis! With our collaborators BioTargen, we performed #illumina sequencing and RNA-seq analysis from horse samples. https://lnkd.in/eNXbY2hF

Pleased to announce our QC tool for Nanopore sequencers #ToulligQC is available as a nf-core module 🎉 Implemented in Nextflow, users can modulate ToulligQC to their need! ToulligQC 2.7 => is fast (few minutes on a laptop) => supports all versions of Guppy and Dorado => can be used with all the @nanopore sequencing devices #MinION #GridION #PrometION => accepts POD5, Fast5, FASTQ, BAM etc.. The report contains exhaustive information about the sequencing run, basecalling and demultiplexing steps => read count and length distributions, homogeneity of the run, location of potential flow cell spatial biases, statistics about pass and fail reads, data by barcodes ... Oxford Nanopore Technologies

Notre plate-forme a le label IBISA, découvrez le GIS IBiSA 👇

👏 Merci à Corinne Blugeon et Salomé Brunon pour leur présentation des résultats de leurs tests RNA-seq low-input sur le robot Magelia d'INOREVIA 👏 GenomiqueENS France Génomique #AGFG2024