Abstract is missing.
- BicNET: Efficient Biclustering of Biological Networks to Unravel Non-Trivial ModulesRui Henriques, Sara C. Madeira. 1-15 [doi]
- Simultaneous Optimization of both Node and Edge Conservation in Network Alignment via WAVEYihan Sun, Joseph Crawford, Jie Tang, Tijana Milenkovic. 16-39 [doi]
- The Topological Profile of a Model of Protein Network Evolution Can Direct Model ImprovementTodd A. Gibson, Debra S. Goldberg. 40-52 [doi]
- Algorithms for Regular Tree Grammar Network Search and Their Application to Mining Human-Viral Infection PatternsIlan Y. Smoly, Amir Carmel, Yonat Shemer-Avni, Esti Yeger Lotem, Michal Ziv-Ukelson. 53-65 [doi]
- Orthology Relation and Gene Tree Correction: Complexity ResultsManuel Lafond, Nadia El-Mabrouk. 66-79 [doi]
- Finding a Perfect Phylogeny from Mixed Tumor SamplesAdemir Hujdurovic, Ursa Kacar, Martin Milanic, Bernard Ries, Alexandru I. Tomescu. 80-92 [doi]
- A Sub-quadratic Time and Space Complexity Solution for the Dated Tree Reconciliation Problem for Select Tree TopologiesBenjamin Drinkwater, Michael A. Charleston. 93-107 [doi]
- Maximum Parsimony Analysis of Gene Copy Number ChangesJun Zhou, Yu Lin, Vaibhav Rajan, William Hoskins, Jijun Tang. 108-120 [doi]
- Multiple-Ancestor Localization for Recently Admixed IndividualsYaron Margalit, Yael Baran, Eran Halperin. 121-135 [doi]
- Association Mapping for Compound Heterozygous Traits Using Phenotypic Distance and Integer ProgrammingDan Gusfield, Rasmus Nielsen. 136-147 [doi]
- Semi-nonparametric Modeling of Topological Domain Formation from Epigenetic DataEmre Sefer, Carl Kingsford. 148-161 [doi]
- Scrible: Ultra-Accurate Error-Correction of Pooled Sequenced ReadsDenise Duma, Francesca Cordero, Marco Beccuti, Gianfranco Ciardo, Timothy J. Close, Stefano Lonardi. 162-174 [doi]
- Jabba: Hybrid Error Correction for Long Sequencing Reads Using Maximal Exact MatchesGiles Miclotte, Mahdi Heydari, Piet Demeester, Pieter Audenaert, Jan Fostier. 175-188 [doi]
- Optimizing Read Reversals for Sequence Compression - (Extended Abstract)Zhong Sichen, Lu Zhao, Yan Liang, Mohammadzaman Zamani, Robert Patro, Rezaul Chowdhury, Esther M. Arkin, Joseph S. B. Mitchell, Steven Skiena. 189-202 [doi]
- Circular Sequence Comparison with q-gramsRoberto Grossi, Costas S. Iliopoulos, Robert Mercas, Nadia Pisanti, Solon P. Pissis, Ahmad Retha, Fatima Vayani. 203-216 [doi]
- Bloom Filter Trie - A Data Structure for Pan-Genome StorageGuillaume Holley, Roland Wittler, Jens Stoye. 217-230 [doi]
- A Filtering Approach for Alignment-Free Biosequences Comparison with MismatchesCinzia Pizzi. 231-242 [doi]
- Models and Algorithms for Genome Rearrangement with Positional ConstraintsKrister M. Swenson, Mathieu Blanchette. 243-256 [doi]
- Sparse RNA Folding Revisited: Space-Efficient Minimum Free Energy PredictionSebastian Will, Hosna Jabbari. 257-270 [doi]
- A Sparsified Four-Russian Algorithm for RNA FoldingYelena Frid, Dan Gusfield. 271-285 [doi]
- Higher Classification Accuracy of Short Metagenomic Reads by Discriminative Spaced k-mersRachid Ounit, Stefano Lonardi. 286-295 [doi]
- Graph-Theoretic Modelling of the Domain Chaining ProblemPoly H. da Silva, Simone Dantas, Chunfang Zheng, David Sankoff. 296-307 [doi]
- Efficient Design of Compact Unstructured RNA Libraries Covering All k-mersYaron Orenstein, Bonnie Berger. 308-325 [doi]