Table of Contents

• Spot the Difference: Tornado VisualizationsGreg Foss, A. McGovern, C. K. Potvin, B. Dahl, Greg Abram, Anne Bowen, N. Hulkoti, Arnav Kaul, Nick Sehy. [doi]
• XSEDE Technology Investigation Service (TIS)Victor Hazlewood, Dan LaPine, J. Ray Scott, Derek Simmel, David Walling, Peter Enstrom, Tabitha Samuel, Jason Charcalla, Maytal Dahan, John Towns. [doi]
• Apache Airavata Sharing Service: A Tool for Enabling User Collaboration in Science GatewaysSupun Nakandala, Suresh Marru, Marlon Piece, Sudhakar Pamidighantam, Kenneth Yoshimoto, Terri Schwartz, Subhashini Sivagnanam, Amit Majumdar, Mark A. Miller. [doi]
• Building Bridges: The System Administration Tools and Techniques Used to Deploy BridgesRichard Underwood. [doi]
• A Buffering Approach to Manage I/O in a Normalized Cross-Correlation Earthquake Detection Code for Large Seismic DatasetsDawei Mu, Pietro Cicotti, Yifeng Cui, En-Jui Lee, Po Chen. [doi]
• OpenMP 4 Fortran Modernization of WSM6 for KNLT. A. J. Ouermi, Aaron Knoll, Robert M. Kirby, Martin Berzins. [doi]
• Data Access for LIGO on the OSGDerek Weitzel, Brian Bockelman, Duncan A. Brown, Peter Couvares, Frank Würthwein, Edgar Fajardo Hernandez. [doi]
• A Quick Outlier Detection in Wireless Body Area NetworksTemilola Aderibigbe, Hongmei Chi. [doi]
• Evaluation of Intel Omni-Path on the Intel Knights Landing ProcessorCarlos Rosales, Antonio Gómez-Iglesias. [doi]
• Comet: Tales from the Long Tail: Two Years In and 10, 000 Users LaterShawn Strande, Haisong Cai, Trevor Cooper, Karen Flammer, Christopher Irving, Gregor von Laszewski, Amit Majumdar, Dmitry Mishin, Philip M. Papadopoulos, Wayne Pfeiffer, Robert S. Sinkovits, Mahidhar Tatineni, Rick Wagner, Fugang Wang, Nancy Wilkins-Diehr, Nicole Wolter, Michael L. Norman. [doi]
• Managing dbGaP Data with Stratus, a Research Cloud for Protected DataEvan F. Bollig, Graham T. Allan, Benjamin J. Lynch, Yectli Huerta, Mathew Mix, Brent Swartz, Edward A. Munsell, Joshua Leibfried, Naomi Hospodarsky. [doi]
• SeedMe: Data Sharing Building BlocksAmit Chourasia, David R. Nadeau, Michael L. Norman. [doi]
• A Voice for BioinformaticsCarrie L. Ganote, Sheri A. Sanders, Bhavya Nalagampalli Papudeshi, Philip D. Blood, Thomas G. Doak. [doi]
• Demonstrating Distributed Workflow Computing with a Federating Wide-Area File SystemPhilip D. Blood, Anjana Kar, Jason Sommerfield, Beth Lynn Eicher, Richard Angeletti, J. Ray Scott. [doi]
• Gonzalo and Sandy: Hurricane VisualizationsGreg Foss, Fuqing Zhang, Yonghui Weng, Erin Munsell, Anne Bowen, Dave Semeraro, Arnav Kaul, Nick Sehy. [doi]
• Sandstone HPC: A Domain-General Gateway for New HPC UsersZebula Sampedro, Thomas Hauser, Saurabh Sood. [doi]
• A CyberGIS-Jupyter Framework for Geospatial Analytics at ScaleDandong Yin, Yan Liu, Anand Padmanabhan, Jeff Terstriep, Johnathan Rush, Shaowen Wang. [doi]
• Extracting Meaningful Data from Decomposing BodiesAlison Langmead, Paul Rodriguez, Sandeep Puthanveetil Satheesan, Alan B. Craig. [doi]
• Optimizing High Performance Big Data Cancer WorkflowsIvan Jimenez-Ruiz, Ricardo González-Méndez, Alexander Ropelewski. [doi]
• Globus: Research Data Management as Service and PlatformKyle Chard, Ian T. Foster, Steven Tuecke. [doi]
• Modernizing GooFit: A Case StudyHenry Schreiner. [doi]
• Introducing Protein 3-D Visualization Software to Freshman Undergraduate Students: Making Connections and Building SkillsA. M. Brown, D. R. Bevan. [doi]
• Pillars of the Mantle: Imaging the Interior of the Earth with Adjoint TomographyDavid Pugmire, Ebru Bozdag, Matthieu Lefebvre, Jeroen Tromp, Dimitri Komatitsch, Daniel Peter, Norbert Podhorszki, Judith Hill. [doi]
• Container-based Analysis Environments for Low-Barrier Access to Research DataCraig Willis, Mike Lambert, Kenton McHenry, Christine Kirkpatrick. [doi]
• Ethical Considerations of Doing Research at ScaleNathaniel Kremer-Herman. [doi]
• Visual Exploration and Analysis of Time Series Earthquake DataA. Chourasia, K. B. Richards-Dinger, J. H. Dieterich, Y. Cui. [doi]
• Performance Characterization and Optimization Assessment of Bioinformatics ApplicationsPietro Cicotti, Wayne Pfeiffer, Madhu Gujral, Robert S. Sinkovits, Shawn Strande, Ron Hawkins. [doi]
• Scalable Photogrammetry with High Performance ComputingTassie Gniady, Guangchen Ruan, William R. Sherman, Esen Tuna, Eric A. Wernert. [doi]
• Advancing the Representation of Women in HPC at Purdue UniversityGladys K. Andino, Marisa Brazil, Michael Gribskov, Preston Smith. [doi]
• Visualization of NCAR's Wind Forecast Improvement Project 2Scott Pearse, Pedro Jimenez Munoz, Branko Kosovic. [doi]
• Performance Analysis of Applications using Singularity Container on SDSC CometEmily Le, David Paz. [doi]
• COSMIC2: A Science Gateway for Cryo-Electron Microscopy Structure DeterminationM. A. Cianfrocco, Mona Wong-Barnum, C. Youn, R. Wagner, A. Leschziner. [doi]
• Challenges of Workload Analysis on Large HPC Systems: A Case Study on NCSA Blue WatersJoseph P. White, Martins Innus, Matthew D. Jones, Robert L. DeLeon, Nikolay Simakov, Jeffrey T. Palmer, Steven M. Gallo, Thomas R. Furlani, Michael T. Showerman, Robert Brunner, Andry Kot, Gregory H. Bauer, Brett Bode, Jeremy Enos, William T. Kramer. [doi]
• Flexible Enforcement of Multi-factor Authentication with SSH via Linux-PAM for Federated Identity UsersDerek Simmel, Shane Filus. [doi]
• Physical Signatures of Cancer MetastasisAnne Bowen, Abdul N. Malmi-Kakkada. [doi]
• Interactive HPC Gateways with Jupyter and JupyterhubMichael Milligan. [doi]
• A Platform for Computationally Advanced Collaborative AgroInformatics Data Discovery and AnalysisAndrew Gustafson, Jesse J. Erdmann, Michael Milligan, Getiria Onsongo, Philip G. Pardey, Tom Prather, Kevin A. T. Silverstein, James Wilgenbusch, Ying Zhang. [doi]
• A Real-Time Machine Learning and Visualization Framework for Scientific WorkflowsFeng Li, Fengguang Song. [doi]
• High Performance Computing Enabled Simulation of the Food-Water-Energy System: Simulation of Intensively Managed LandscapesHarold E. B. Dennis, Adam S. Ward, Tyler Balson, Yuwei Li, Robert Henschel, Shawn Slavin, Stephen C. Simms, Holger Brunst. [doi]
• Visualization of Tropical Cyclone-Ocean InteractionsDavid Bock. [doi]
• Experiences Porting Scientific Applications to the Intel (KNL) Xeon Phi PlatformNicholas Malaya, Damon McDougall, Craig Michoski, Myoungkyu Lee, Christopher S. Simmons. [doi]
• Accelerating High-energy Physics Exploration with Deep LearningDave Ojika, Darin Acosta, Ann Gordon-Ross, Andrew Carnes, Sergei Gleyzer. [doi]
• Analytics Environments on Demand: Providing Interactive and Scalable Research Computing with WindowsJason C. Christopher. [doi]
• Undergraduate Educational Pathways for Developing a High-Performance Computing WorkforcePeter J. Hawrylak, John Hale, Mauricio Papa. [doi]
• XDMoD Value Analytics: A Tool for Measuring the Financial and Intellectual ROI of Your Campus Cyberinfrastructure FacilitiesBen Fulton, Steven M. Gallo, Robert Henschel, Thomas Yearke, Katy Börner, Robert L. DeLeon, Thomas R. Furlani, Craig A. Stewart, Matthew R. Link. [doi]
• Accelerating Economic Innovation and Impact Discovery Through HPCCody Kankel, Grace Enright, Conor Flynn, Scott Hampton. [doi]
• The Community Software Repository from XSEDE: A Resource for the National Research CommunityJohn-Paul Navarro, Craig A. Stewart, Richard Knepper, Lee Liming, David Lifka, Maytal Dahan. [doi]
• Advancing Analysis of High Resolution Topography Using Distributed HPC Resources in OpenTopographyViswanath Nandigam, Christopher J. Crosby, J. Ramon Arrowsmith, Minh Phan, Kai Lin, Benjamin Gross. [doi]
• Implicit-Explicit Strong Stability Preserving Runge-Kuta Methods with High Linear OrderSidafa Conde, Sigal Gottlieb, Zachary J. Grant, John N. Shadid. [doi]
• We Have an HPC System: Now What?Chet Langin. [doi]
• Cloud-enabling a Collaborative Research Platform: The GABBs StoryRajesh Kalyanam, Rob Campbell, Derrick Kearney, Leif Delgass, Larry Biehl, Lan Zhao, Carolyn Ellis, Carol X. Song. [doi]
• Live Integrated Visualization Environment: An Experiment in Generalized Structured Frameworks for Visualization and AnalysisJames H. Money, Thomas Szewczyk. [doi]
• Building Community Informed and Driven Data Services at the National Center for Atmospheric ResearchChung-Yi Hou, Matthew S. Mayernik, Steven J. Worley. [doi]
• Performance of Image Matching in the Computational Anatomy Gateway: CPU and GPU Implementations in OpenCLDaniel Jacob Tward, Brian Lee, Partha Mitra, Michael I. Miller. [doi]
• GenApp Integrated with OpenStack Supports Elastic Computing on JetstreamEmre H. Brookes, Alexey Savelyev. [doi]
• Advanced Computing for Social Change: Educating and Engaging Our Students to Compete in a Changing WorkforceKelly Gaither, Rosalia Gomez, Linda Akli, Ruby Mendenhall, Marques Bland, Susan Fratkin, Lorna Rivera, Lizanne DeStefano. [doi]
• Portable Learning Environments for Hands-On Computational Instruction: Using Container- and Cloud-Based Technology to Teach Data ScienceChris Holdgraf, Aaron Culich, Ariel Rokem, Fatma Deniz, Maryana Alegro, Daniela Ushizima. [doi]
• GPU-accelerated Cellular Automata based Finite-Difference Model for Seismic Wave Propagation with OpenCLMark Garrett, Trinh Le, Vinil Nelaturi, Liwen Shih. [doi]
• The PHASTA Science Gateway: Web-based Execution of Adaptive Computational Fluid Dynamics SimulationsCameron W. Smith, Eroma Abeysinghe. [doi]
• Insights into Research Computing Operations using Big Data-Powered Log AnalysisFang Cherry Liu, Weijia Xu, Mehmet Belgin, Ruizhu Huang, Blake C. Fleischer. [doi]
• DesignSafe: Using Elasticsearch to Share and Search Data on a Science Web PortalJosue Balandrano Coronel, Stephen Mock. [doi]
• High Performance GP-Based Approach for fMRI Big Data ClassificationAmirhessam Tahmassebi, Amir H. Gandomi, Anke Meyer-Bäse. [doi]
• Dynamically Creating Custom SDN High-Speed Network Paths for Big Data Science FlowsP. Sergio Rivera, Mami Hayashida, James Griffioen, Zongming Fei. [doi]
• Macroscopes for Making Sense of ScienceKaty Börner, Elizabeth Record. [doi]
• Extracting, Assimilating, and Sharing the Results of Image Analysis on the FSA/OWI Photography CollectionPaul Rodriguez, Sandeep Puthanveetil Satheesan, Jeffrey Will, Elizabeth Wuerffel, Alan B. Craig. [doi]
• The Impacts of Outreach Efforts by Research Computing at the University of Colorado BoulderSarah Papich, Shelley Knuth, Peter Ruprecht, Thomas Hauser. [doi]
• Shared Research Group Storage Solution with Integrated Access ManagementDaniel T. Dietz, Lev A. Gorenstein, Gregory S. Veldman, Kevin D. Colby. [doi]
• Simulating Multiphase Flows in Porous Media Using OpenFOAM on Intel Xeon Phi Knights Landing ProcessorsZhi Shang, Honggao Liu. [doi]
• Performance Benchmarking of the R Programming Environment on the Stampede 1.5 SupercomputerJames R. McCombs, Scott Michael. [doi]
• Stampede 2: The Evolution of an XSEDE SupercomputerDan Stanzione, Bill Barth, Niall Gaffney, Kelly Gaither, Chris Hempel, Tommy Minyard, Susan Mehringer, Eric A. Wernert, H. Tufo, Dhabaleswar K. Panda, P. Teller. [doi]
• Predict Florida Tourism Trend via Using Data Mining TechniquesGeorge Kurian, Hongmei Chi. [doi]
• De Novo Assembly of Lucina pectinata Genome using Ion Torrent ReadsIngrid M. Montes-Rodríguez, Carmen L. Cadilla, Ricardo González-Méndez, Juan Lopéz-Garriga, Alexander Ropelewski. [doi]
• Spark on the ARC: Big data analytics frameworks on HPC clustersMark E. DeYoung, Mohammed Salman, Himanshu Bedi, David Raymond, Joseph G. Tront. [doi]
• Improving Uintah's Scalability Through the Use of Portable Kokkos-Based Data Parallel TasksJohn K. Holmen, Alan Humphrey, Daniel Sunderland, Martin Berzins. [doi]
• Enhancing Access to Digital Media: The Language Application Grid in the HTRC Data CapsuleJames Pustejovsky, Marc Verhagen, Keongmin Rim, Yu Ma, Liang Ran, Samitha Liyanage, Jaimie Murdock, Robert H. McDonald, Beth Plale. [doi]
• Utilizing Computational Techniques to Accelerate Discovery in Peanut Allergenicity: A Case StudyL. R. Hollingsworth IV, A. M. Brown, D. R. Bevan. [doi]
• Training-based Workforce Development in Advanced Computing for Research and Education (ACoRE)Semir Sarajlic, Neranjan Edirisinghe, Yubao Wu, Yi Jiang, Gregori Faroux. [doi]
• Deploying RMACC Summit: An HPC Resource for the Rocky Mountain RegionJonathon Anderson, Patrick J. Burns, Daniel Milroy, Peter Ruprecht, Thomas Hauser, Howard Jay Siegel. [doi]
• Interactive Code Adaptation Tool for Modernizing Applications for Intel Knights Landing ProcessorsRitu Arora, Lars Koesterke. [doi]