Biodiversity Genomics Europe’s Post

We are excited to share our latest preprint: ‘GenomeFISH: genome-based fluorescence in situ hybridisation for strain-level visualisation of microbial communities’ 🔬 This study introduces GenomeFISH—an innovative, genome-based fluorescence in situ hybridisation (FISH) technique that couples high-throughput single cell genomics with whole-genome hybridisation. This powerful method enables strain-level visualisation of microbial communities, offering unparalleled insights into microbial ecology. By facilitating the characterisation of microbial communities at a resolution that was previously unattainable with traditional FISH methods, we hope GenomeFISH will become the new gold standard in the visualisation of complex microbial ecosystems. Congratulations to CMR’s Gene Tyson, Simon McIlroy, Pam Engelberts, Allison McInnes, Ben Woodcroft and James Volmer, as well as Jun Ye, Donovan Parks and Eilish McMaster, for all the hard work that went into bringing GenomeFISH to life! You can find the full article here: https://shorturl.at/qOdAv #Microbiology #Genomics #FISH #MicrobialEcology

We (#Phycology Research Group @GhentUniversity) are happy to contribute with a case study to the @BioGenEurope directed "Enhancing Biodiversity Genomics Applications" program. We are aiming to establish reference genomes for Porphyra linearis and Porphyra dioica to support ongoing research. This effort will improve to understand underlying fundamental processes in red macroalgal evolution, adaptation and specifically observed life cycle variations. Besides advancing fundamental knowledge in this ancient lineage of red algae, the added genomic data can help to overcome hurdles in European Porphyra valorisation. Stay tuned for updates on our journey to advance biodiversity genomics! 🧬🌿 #Genomics #Biodiversity   @REA_research, @SBFI_CH, @ISBSIB @Eugreenresearch

A recent study by Instituto de Ciencias Marinas de Andalucía (ICMAN-CSIC), Puerto Real, Spain on the Atlantic croaker's invasion history in Europe marks a significant contribution to understanding non-native fish species' impact on southwestern European waters. Bioer's GeneExplorer Thermal Cycler with its advanced technology facilitated the precise DNA amplification necessary for molecular identification, proving its effectiveness in genetic research. Specifically, GeneExplorer was used for the PCR process, which amplified fragments of the mitochondrial gene cytochrome c oxidase subunit 1 (COI) for molecular identification of the Atlantic croaker. The PCR cycles conducted on the Bioer GeneExplorer thermal cycler ensured precise and accurate DNA amplification necessary for the genetic analysis reported in the study. Explore the details of the study and see how Bioer’s GeneExplorer makes groundbreaking research possible. Link to the study: https://lnkd.in/gRKUaQev #Bioer #GeneExplorer #DNAAmplification #GeneticResearch #AtlanticCroaker #InvasionHistory #MarineBiology #MolecularBiology #ResearchInnovation

🚨 New ERGA-BGE Genome Now Available! 🐐 Rupicapra rupicapra is the most abundant mountain ungulate in Europe. ⛰️ Explore the #genome report to learn more about the sampling, assembly and annotation methods ➡️ https://lnkd.in/eEyHFGdj Biodiversity Genomics Europe Earth BioGenome Project #genomes for #Biodiversity #genomics

🎉 The ERGA-BGE genome report for the Striped Field Mouse (Apodemus agrarius) is now available! 🔗https://lnkd.in/eBM_E33S This #genome is a valuable resource for #phylogenetic studies of rodents, especially mice. 🐭 The sequenced individual was sampled in Slovenia, but Apodemus agrarius is a widespread species found across East Asia and Eastern Europe 🌍🌏 This new high-quality  #Genome will help scientists understand the factors influencing its broad distribution. Biodiversity Genomics Europe, Univerza v Mariboru, Centro Nacional de Análisis Genómico (CNAG), Ensembl #genomes for #biodiversity

🌟 Highlights from CIPRES Publications (Nov 29 - Dec 5, 2024) From identifying two new salamander species in Costa Rica 🦎 to genome mining enzymes with groundbreaking capabilities, these studies reflect the transformative role of computational tools in biodiversity and molecular research. Featured findings include: ✅ A new phylogeny of clupeiform lineages 🐟 ✅ Novel fungal species from organic systems 🌱 ✅ Advances in detecting invasive species #BiodiversityResearch #Phylogenetics #Genomics #ComputationalBiology #CIPRES Dive into these discoveries: https://buff.ly/3ZmzaG2

🤔 What are 𝘁𝗵𝗲 𝗰𝗵𝗮𝗹𝗹𝗲𝗻𝗴𝗲𝘀 𝗮𝗻𝗱 𝗼𝗽𝗽𝗼𝗿𝘁𝘂𝗻𝗶𝘁𝗶𝗲𝘀 𝗶𝗻 𝗰𝗼𝗻𝘀𝗲𝗿𝘃𝗮𝘁𝗶𝗼𝗻, 𝗰𝗵𝗮𝗿𝗮𝗰𝘁𝗲𝗿𝗶𝘇𝗮𝘁𝗶𝗼𝗻, 𝗮𝗰𝗰𝗲𝘀𝘀 𝗮𝗻𝗱 𝘂𝘀𝗲 𝗼𝗳 𝗽𝗹𝗮𝗻𝘁 𝗴𝗲𝗻𝗲𝘁𝗶𝗰 𝗿𝗲𝘀𝗼𝘂𝗿𝗰𝗲𝘀 𝗶𝗻 𝗘𝘂𝗿𝗼𝗽𝗲? During the 𝗷𝗼𝗶𝗻𝘁 𝗣𝗥𝗢-𝗚𝗥𝗔𝗖𝗘/EMPHASIS on Plant Phenomics 𝗣𝗼𝗹𝗶𝗰𝘆 𝗦𝘆𝗺𝗽𝗼𝘀𝗶𝘂𝗺 𝗼𝗻 𝗣𝗹𝗮𝗻𝘁 𝗚𝗲𝗻𝗲𝘁𝗶𝗰 𝗥𝗲𝘀𝗼𝘂𝗿𝗰𝗲𝘀 that took place last month we discussed: 🔸Why is there a need for a European Research Infrastructure dedicated to plant genetic resources 🔸International policy frameworks impacting the conservation, access and use of plant genetic resources 🔸Examples of national initiatives for the conservation of plant genetic resources in the Netherlands and Spain 🔸INCREASE project and the decentralized conservation of plant genetic resources 🔸ECPGR: A European Programme for Plant Genetic Resource 🔸Seed sector perspective on the potential of plant genetic resources 🔸EMPHASIS: The road towards a plant phenotyping community   🎥Watch the session in 2 parts here ▶️ https://lnkd.in/gfqwj7Yb https://lnkd.in/gh6ACZhb ℹ️Check out all the presentations 💻 and video recordings 🎥 from the event on the project's website! 👇👇👇 https://lnkd.in/g_MrjKFy #plantgeneticresources #cropbiodiversity #plantphenotyping CSIC ENEA Euroseeds Universidad del País Vasco/Euskal Herriko Unibertsitatea Centre for Genetic Resources, the Netherlands (CGN) Università Politecnica delle Marche International Seed Federation Forschungszentrum Jülich EU Science, Research and Innovation

Hey everyone! Excited to share our research poster on mitochondrial DNA inheritance in bivalves, presented today at the Ruppin Academic Center. Our team, Tsoor Hartov, Matan Maimony, Ran Eisenberg, and I, under the guidance of Prof. Yaron Tikochinski, examined the phenomenon of Doubly Uniparental Inheritance (DUI) in over 100 bivalve species. Through R. Philippinarum 🦪, we explored mechanisms and implications of DUI and sex-dependent heteroplasmy, revealing insights into genetic diversity and mutation dynamics. Our findings highlight unique evolutionary pathways for male and female bivalves, shedding light on potential commercial applications in aquaculture. Stay tuned for our detailed article! 🧬 #Research #Genetics #Bivalves #Aquaculture

We've unlocked additional secrets of the water hyacinth's DNA! This pesky plant, known for taking over water bodies in warm regions, now has its complete mitochondrial genome mapped out. In Kenya, the water hyacinth is notorious for clogging up lakes and rivers, disrupting ecosystems and livelihoods. We found 58 unique genes in its DNA, including some that potentially help it adapt to stressful conditions. Surprisingly, we discovered bits of DNA from its chloroplasts in its mitochondria, showing how it's been mixing things up genetically. Plus, we found evidence of natural selection in certain genes, suggesting how the plant copes with its environment. This study sheds light on how water hyacinth invades new areas and how its DNA evolves over time, providing valuable insights for managing its spread. #brackenhurstBotanicGardenandForest Centre for Ecosystem Restoration - Kenya https://lnkd.in/dqqPzU2F

Through in-depth lectures, real-world case studies, and extensive hands-on exercises, you will learn how to analyze, interpret, and visualize metagenomic data. Take your expertise to new heights by enrolling in 𝐎𝐦𝐢𝐜𝐬𝐋𝐨𝐠𝐢𝐜 𝐌𝐞𝐭𝐚𝐠𝐞𝐧𝐨𝐦𝐢𝐜𝐬 𝐃𝐚𝐭𝐚 𝐀𝐧𝐚𝐥𝐲𝐬𝐢𝐬 𝐏𝐫𝐨𝐠𝐫𝐚𝐦 today! Submit your registration TODAY! Learn more: https://lnkd.in/g4dCZnvE #Metagenomics #Microbiome #GenomeSequencing #EnvironmentalScience #Microbiology #Ecology #Bioinformatics #DNASequencing #MicrobialDiversity #FunctionalMetagenomics #Ecosystem #MetagenomicAnalysis #Genomics #Bacteria #HumanMicrobiome #Omics #Technology #NextGenerationSequencing