REGINA G. BARBER: You're listening to Short Wave, from NPR. Hey, Short Wavers. It's Regina Barber. And we're starting today's episode with breakfast because regardless of what you had for breakfast today, chances are at least part of it was made by fermentation. Yogurt and granola? Fermentation. Eggs with cheese? Fermentation. Bread? Fermentation. It's even key in coffee.
DAVID ZILBER: When a coffee bean is harvested in the jungles of Costa Rica or Colombia or wherever it might be, those berries which look like little tiny cherries or almost like crab apples, they get hauled into two baskets or trucks and then, like, thrown onto the ground. And there's either, like, dry or wet fermentation. But in both cases, just whatever endemic microbes are in the jungle on the fruit start to acidify and metabolize all of the fruit flesh. And all those metabolites, all the acids that are produced, all the organic molecules seep into the actual coffee bean itself and change its flavor.
BARBER: This is David Zilber, chef, reality TV show host, and former director of the Fermentation Lab at the world-famous Danish restaurant Noma. And he told me if fermentation wasn't part of my coffee, it wouldn't even be good.
ZILBER: If you took a fresh coffee bean and, like, completely stripped it of the fruit and dried it immediately and then went through the same roasting process, you would end up with the most, like, flat, cardboardy, acrid coffee compared to what happens post fermentation. So fermentation is an incredibly important step in coffee production.
BARBER: To make it taste delicious?
ZILBER: Yeah. Complex.
BARBER: OK. I'm convinced. Fermentation is important. But what exactly is it?
ZILBER: Fermentation is the transformation of one food into another with the help of microbes.
BARBER: To me, that transformation kind of sounds like magic, like you're a wizard. And you wave your wand, and you turn cucumbers into pickles. But David says it's also kind of like being a bouncer at a nightclub.
ZILBER: You, as the fermenter, take the role of the bouncer. You have a velvet rope at your disposal. You stand at the door. And a great ferment is the club inside where it's full of beautiful people making great conversations, sipping on champagne. And it's a fantastic party. And it's your job at the door to turn away all the bad actors, all the people that are going to go inside and start a fight, just ruin the vibe. And you just want to let in the good microbes.
BARBER: So today on the show, welcome to the hottest spot around, club fermentation. We're talking microbes. We're talking acids. We're talking sauerkraut, sourdough, and sour beer. You're listening to Short Wave, the science podcast from NPR.
BARBER: So, David, let's just start with the beginning, your beginning. When was the very first time you fermented anything?
ZILBER: Yeah. So I was in grade school. And I was, like, at home alone in the morning. I was just eating Honey Nut Cheerios, like any other North American kid, watching Transformers on Fox Kids.
BARBER: Yeah.
ZILBER: And I don't finish my breakfast. I just throw the bowl up on the counter and then, like, jet off to school. And this is, like, end of the school year. It's summer. It's hot in our little cramped apartment in Toronto. And I come back to my mom, who's already, like, setting up for dinner. And then she's like, clean up after yourself. Your breakfast is on the counter. And then I go like, sorry, Mom, pick up the bowl. And the milk is set. It's like jelly.
BARBER: Ew!
ZILBER: And I'm like, Mom, what has happened? And she's like, you made yogurt. Now please clean it up. We have stuff to do. And I was like, how can I make yogurt? That is something you buy.
BARBER: Yeah.
ZILBER: I can't just, like, leave the house one day and make LEGO when I come back. That's something you buy from a toy store. Yogurt is something you buy from the grocery store. But yeah, I was doing research. And I was like, oh, wait, all these microbes that live in your mouth are the same microbes that people have used for fermentation for thousands of years. Like, the reason you have to brush your teeth is because lactic acid bacteria eat all the food that doesn't make it down your esophagus and turn all of those scraps into lactic acid, which then rots your enamel and corrodes it.
BARBER: I love that.
ZILBER: And that is--
BARBER: I love it.
ZILBER: That is the same action.
BARBER: You're putting those microbes back into the milk that's in your cereal.
ZILBER: Exactly. And if you're lucky, they're there in the right amounts to do what they do in yogurt and acidify the milk, coagulate the milk proteins, and make this gel.
BARBER: So when you're fermenting something-- let's start at the beginning-- like, what do you need to start this fermentation process?
ZILBER: You need food. You need food that you would want to eat that hopefully, also, the microbes will want to eat. So to start any fermentation process, you need the food you're looking to ferment. Then you need to find the microbes. There's a couple of ways of going about that. One, they're everywhere. That's good. It's good that they are everywhere. They're on you. They're on our skin. They are high up in the troposphere, floating on motes of dust. There are microbes that have been found in, like, gold mines in South Africa. And they're probably also on the food itself, whether that's flour, whether that's a cabbage. On any given food, they are there as a minority population with a lot of other bacteria-- soil bacteria, microbes, microbes that might be found in feces or manure from the actual field itself. And it's your job to suppress those microbes immediately by using things like oxygen or an absence of oxygen, more specifically, or salt, to make sure that they are tamped down and you give center stage to those lactic acid bacteria.
BARBER: Right. And so what do they do, like, those lactic acid bacteria?
ZILBER: They will start to release enzymes into their environment that will break up the carbohydrates in the plant cells themselves and allow them to digest these sugars, carbohydrates, and starch. And lots of plant fibers are just stitched together chains of simple sugar molecules, like glucose. And so in the great tree of life, lots of organisms have devised enzymes that snip those daisy chains into their constituent molecules. Then they can grab an easily handleable portion of chemical energy in the form of sugar, eat it, and through the process of fermentation, which going back to the textbook microbiology definition is the metabolism in the absence of oxygen of a sugar molecule into either ethanol or lactic acid.
BARBER: So just to review the microbes take the sugar, like from the carbs and starches and whatever food they're given. And they start to break it down. They start to eat it. And that process of microbes eating sugars and turning it into energy, that's fermentation.
ZILBER: Yeah. And then when it harvests the chemical energy, energy for its own purposes, what's left over is lactic acid.
BARBER: That's the byproduct.
ZILBER: That's the byproduct. That's like microbial poop, basically.
BARBER: I like that.
ZILBER: The good thing is that humans seem to like the flavor of lactic acid. And even when a food source gets pretty acidic-- and we're talking about below 4.5 on the pH scale-- like, we find it pretty palatable. And it's something that we enjoy eating. So there in the Venn diagram of foods that microbes like and foods that humans like, there's a lot of overlap there. And when they get to party down in our food supply, we seem to like what they do. And so this is in every way, shape, and form a symbiotic relationship.
BARBER: So we're talking, I'm thinking, of like-- like, you said, sauerkraut pickles, like kimchi. Those are all like, like you said, lacto-fermentation. What about like alcohol, like beer, sake, wine, mead? Like, how is that process different from what we just said?
ZILBER: That--
BARBER: And how is it the same?
ZILBER: Yeah, it is-- it is-- it is different, but it is the same. We're going to go back down the phylogenetic tree of life-- tik-tik-tik-tik-- to the origin of eukaryotes. So there's filamentous fungi floating in the ocean. And then one of these multicellular organisms was like, eh, I'm going to revert back to being a unicellular, just me and my kids, floating as little dots in the sea, microbes. It's kind of like whales going back into the ocean.
BARBER: Wow.
ZILBER: Fungi evolved from single-celled organisms. And yeast-- nothing truly devolves-- but yeast went back from being multicellular organisms to adopting a single-cell lifesytle once again.
BARBER: Wow.
ZILBER: Which is interesting.
BARBER: That is fascinating.
ZILBER: Yeast are-- yeast are cool critters. They are eukaryotes like us, which means they have a cell nucleus. There are thousands of varieties. And all yeast really means is single-celled fungi. So we think of yeast as like, oh, yeast is the thing that is in bread. But there are like thousands and thousands of varieties of yeast, so many different types and clades. And so they do a lot of the same things. If we're baking sourdough bread, they use the action of some of those same lactic acid bacteria that we just talked about. They'll take sugar and they will produce ethanol, yes. But they'll also produce carbon dioxide.
BARBER: Right.
ZILBER: And that carbon dioxide production is what helps to make these little pockets of gas formation inside of a bread dough.
BARBER: Yeah. I've never actually linked bread visually with pockets-- and beer-- of carbon dioxide and like, alcohol. Like, that is-- it's the first time that's ever, in my mind, connected. I'm fascinated. And like, people have been fermenting foods for millennia, right? What's the benefit of fermenting, like, foods. Like, why do we think people have been doing this for so long across so many cultures?
ZILBER: Historically, you can't keep microbes out of your food if you try. This is something we can't forget, right?
BARBER: It's just by accident.
ZILBER: Like, just the history of humanity, if you want to talk, like, plagues and infestations and disease, like, humans have had a rough go of trying to keep microbes out of ourselves. Our food was no exception. So the sorts of culinary tricks that probably primarily many women working in kitchens, many grandmothers and mothers and sisters and daughters, tinkering, being like, oh, this worked. And it worked really well. I should keep doing that because this has lasted or it tastes good or it keeps well. These kind of happy accidents have like accrued and accumulated over thousands of generations to be these entrenched kind of cultural bodies of knowledge that we understand as fermentation. It really is this, like, falling together. It really is this kind of-- it is this kind of beautiful symbiosis. It's like, how does symbiosis arise in any way, shape, or form? It's an accident that works so well that the two parties become bound to each other, whether those are like cleaning fish on a whale shark or oxpeckers on a hippo. Like, it works to the benefit of both parties. And that's exactly what has happened with humans and the microbes that we use in fermented foods.
BARBER: David, thank you so much for talking to us about fermentation. I learned so much. I'm glad that you love it. I can tell you love it.
ZILBER: It's fun. And I love teaching other people about it.
BARBER: This episode was produced by Hannah Chin and edited by our showrunner, Rebecca Ramirez. Tyler Jones checked the facts. Maggie Luth was the audio engineer. Beth Donovan is our senior director. And Collin Campbell is our senior vice president of podcasting strategy. I'm Regina Barber. Thanks for listening to Short Wave from NPR.
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